Agarose - Suitable for molecular biology, Ultra-low Gelling Temperature , CAS No.9012-36-6

CAS: 9012-36-6 Cat. No.: A434532 EC Number: 232-731-8 PubChem CID: 11966311

GRADE & PURITY Suitable for molecular biology, Ultra-low Gelling Temperature

Synonyms

AKOS015916622 | MJQHZNBUODTQTK-WKGBVCLCSA-N | CHEBI:2511 | [4)-3,6-An-alpha-L-Galp-(1->3)-beta-D-Galp-(1->]n | SCHEMBL1413225 | (1->4)-3,6-anhydro-alpha-L-galactopyranosyl-(1->3)-beta-D-galactopyranan | 2-[[3-[2-[(3,4-dihydroxy-2,6-dioxabicyclo[3.2.1]octa

Storage

Room temperature

Overview

Agarose is a polymer extracted from agar or agar-bearing marine algae. This purified linear galactan hydrocolloid comprises alternating co-polymers D-galactose and 3,6-anhydro-L-galactose units connected by α-(1→3) and β-(1→4) glycosidic bonds. Agarose is highly biocompatible and possesses variable mechanical and diffusion properties. Agarose can be used as a gelling agent, to separate nucleic acids electrophoretically.

Application

Agarose has been used: in thaumatin and elastase protein crystallization in microcasting using a polydimethylsiloxane (PDMS) mold with micro-channel in agarose micro-confinement array Yields unusually strong gels for an ultra-low gelling agarose. Ideal for electrophoresis of heat-labile samples and for growth of hybridomas or other cell lines.

Specifications

Synonyms

AKOS015916622 | MJQHZNBUODTQTK-WKGBVCLCSA-N | CHEBI:2511 | [4)-3,6-An-alpha-L-Galp-(1->3)-beta-D-Galp-(1->]n | SCHEMBL1413225 | (1->4)-3,6-anhydro-alpha-L-galactopyranosyl-(1->3)-beta-D-galactopyranan | 2-[[3-[2-[(3,4-dihydroxy-2,6-dioxabicyclo[3.2.1]octa

Specifications & Purity

Suitable for molecular biology, Ultra-low Gelling Temperature

Storage

Room temperature

Grade

Suitable for molecular biology

Names and Identifiers

Canonical Smiles

C1[C@H]2[C@H]([C@@H](O1)[C@@H]([C@@H](O2)O)O)O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O[C@H]4[C@H]([C@H]5[C@@H]([C@@H](O4)CO5)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)O

IUPAC Name

(2S,3R,4S,5R,6R)-2-[[(1S,3S,4S,5S,8R)-3-[(2S,3R,4S,5S,6R)-2-[[(1S,3R,4S,5S,8R)-3,4-dihydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl]oxy]-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-4-hydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

InChIKey

MJQHZNBUODTQTK-WKGBVCLCSA-N

INCHI

1S/C24H38O19/c25-1-5-9(27)11(29)12(30)22(38-5)41-17-8-4-36-20(17)15(33)24(40-8)43-18-10(28)6(2-26)39-23(14(18)32)42-16-7-3-35-19(16)13(31)21(34)37-7/h5-34H,1-4H2/t5-,6-,7+,8+,9+,10+,11+,12-,13+,14-,15+,16-,17-,18+,19+,20+,21-,22+,23+,24+/m1/s1

Isomeric SMILES

C1[C@H]2[C@H]([C@@H](O1)[C@@H]([C@@H](O2)O)O)O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O[C@H]4[C@H]([C@H]5[C@@H]([C@@H](O4)CO5)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)O

Alternate CAS

39346-81-1

PubChem CID

11966311

Taxonomic Classification

Taxonomy Tree

• Kingdom Organic compounds
  • Superclass Organic oxygen compounds
    • Class Organooxygen compounds
      • Subclass Carbohydrates and carbohydrate conjugates

• Kingdom: Organic compounds
• Superclass: Organic oxygen compounds
• Class: Organooxygen compounds
• Subclass: Carbohydrates and carbohydrate conjugates
• Intermediate Tree Nodes: Not available
• Direct Parent: Oligosaccharides
• Alternative Parents: O-glycosyl compounds 1,4-dioxepanes Oxanes Oxolanes Secondary alcohols Hemiacetals Polyols Oxacyclic compounds Dialkyl ethers Acetals Primary alcohols Hydrocarbon derivatives
• Molecular Framework: Aliphatic heteropolycyclic compounds
• Substituents: Oligosaccharide - Glycosyl compound - O-glycosyl compound - 1,4-dioxepane - Dioxepane - Oxane - Oxolane - Secondary alcohol - Hemiacetal - Acetal - Dialkyl ether - Oxacycle - Ether - Polyol - Organoheterocyclic compound - Hydrocarbon derivative - Primary alcohol - Alcohol - Aliphatic heteropolycyclic compound
• Description: This compound belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.
• External Descriptors: Not available

Data sources

1. Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS. ClassyFire: Automated Chemical Classification With A Comprehensive, Computable Taxonomy. Journal of Cheminformatics, 2016, 8:61.

DOI: 10.1186/s13321-016-0174-y

Chemical and Physical Properties

• x_melt_point_char: 62-68℃
• Molecular Weight: 630.500 g/mol
• XLogP3: -6.500
• Hydrogen Bond Donor Count: 10
• Hydrogen Bond Acceptor Count: 19
• Rotatable Bond Count: 8
• Exact Mass: 630.201 Da
• Monoisotopic Mass: 630.201 Da
• Topological Polar Surface Area: 285.000 Ų
• Heavy Atom Count: 43
• Formal Charge: 0
• Complexity: 946.000
• Isotope Atom Count: 0
• Defined Atom Stereocenter Count: 20
• Undefined Atom Stereocenter Count: 0
• Defined Bond Stereocenter Count: 0
• Undefined Bond Stereocenter Count: 0
• The total count of all stereochemical bonds: 0
• Covalently-Bonded Unit Count: 1