3′-Deoxythymidine - ≥98% , CAS No.3416-05-5

CAS: 3416-05-5 Cat. No.: D119468 Molecular Weight: 226.23 Beilstein Registry Number: 21884 EC Number: MFCD00010570
AVAILABLE TO ORDER
GRADE & PURITY ≥98%
Synonyms
DDT | 2',3'-Dideoxythymidine & Granulocyte-macrophage colony-stimulating factor | 1-[(2R,5S)-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione | 3'-deoxy thymidine | cid_5280 | 1-((2R,5S)-5-(hydroxymethyl)-tetrahydrofuran-2-yl)-5-methylpyrimidine
Storage
Store at 2-8°C
Shipped In
Wet ice
 ·  off list, applied to all prices below.
Size
Status
Price
Qty
25mg
D119468-25mg
3

$9.90

$14.90
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100mg
D119468-100mg
2

$28.90

$43.90
Save $15.00 (34.17%)
500mg
D119468-500mg
8-12 wks(?) Production requires sourcing of materials. We appreciate your patience and understanding.

$108.90

$163.90
Save $55.00 (33.56%)
1g
D119468-1g
8-12 wks(?) Production requires sourcing of materials. We appreciate your patience and understanding.

$177.90

$266.90
Save $89.00 (33.35%)
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Why this grade

≥98% for sensitive chromatographic and analytical workflows requiring minimal baseline interference.

🌡

Storage & shipping

Store at 2-8°C Ships Wet ice Check lot-specific COA for exact specifications.

📋

Quality documents

SDS, COA, datasheet, and spec sheet available for download. Lot-specific COA accessible via lot number lookup.

📚

Literature proof

Cited in 0 peer-reviewed publications across chromatography, organic synthesis, and cross-coupling reactions.

Overview

Research tool for antiviral and anticancer studies

Specifications

Synonyms
DDT | 2', 3'-Dideoxythymidine & Granulocyte-macrophage colony-stimulating factor | 1-[(2R, 5S)-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2, 4-dione | 3'-deoxy thymidine | cid_5280 | 1-((2R, 5S)-5-(hydroxymethyl)-tetrahydrofuran-2-yl)-5-methylpyrimidine
Specifications & Purity
≥98%
Storage
Store at 2-8°C
Shipped In
Wet ice
This product requires cold chain shipping. Ground and other economy services are not available.
Action Type
INHIBITOR
Purity
≥98%
Names and Identifiers
Pubchem Sid504753960
Pubchem Sid Urlhttps://pubchem.ncbi.nlm.nih.gov/substance/504753960
Canonical SmilesCC1=CN(C(=O)NC1=O)C2CCC(O2)CO
IUPAC Name1-[(2R,5S)-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
InChIKeyXKKCQTLDIPIRQD-JGVFFNPUSA-N
INCHI1S/C10H14N2O4/c1-6-4-12(10(15)11-9(6)14)8-3-2-7(5-13)16-8/h4,7-8,13H,2-3,5H2,1H3,(H,11,14,15)/t7-,8+/m0/s1
Isomeric SMILES CC1=CN(C(=O)NC1=O)[C@H]2CC[C@H](O2)CO
WGK Germany 3
Molecular Weight 226.23
Beilstein 21884
Reaxy-Rn 227705
Reaxys-RN_link_address https://www.reaxys.com/reaxys/secured/hopinto.do?context=S&query=IDE.XRN=227705&ln=

Documentation

📋 Safety Data Sheet (SDS)

Comprehensive hazard, handling, storage, and regulatory compliance document.

Download SDS →

✅ Certificate of Analysis (COA)

Lot-specific quality data. Enter your lot number to retrieve the exact COA.

Look up COA →

📊 Datasheet

Quick-reference summary of product specifications and applications.

View datasheet →

🔬 Specification Sheet

Full quality attributes and acceptance criteria for this grade.

View spec sheet →

Advanced Data

Taxonomic Classification

Taxonomy Tree

KingdomOrganic compounds
SuperclassNucleosides, nucleotides, and analogues
ClassPyrimidine nucleosides
SubclassPyrimidine 2',3'-dideoxyribonucleosides
Intermediate Tree Nodes Not available
Direct ParentPyrimidine 2',3'-dideoxyribonucleosides
Alternative Parents Pyrimidones  Hydropyrimidines  Vinylogous amides  Tetrahydrofurans  Heteroaromatic compounds  Ureas  Lactams  Oxacyclic compounds  Azacyclic compounds  Primary alcohols  Organopnictogen compounds  Organonitrogen compounds  Organic oxides  Hydrocarbon derivatives  
Molecular FrameworkAromatic heteromonocyclic compounds
Substituents Pyrimidine 2',3'-dideoxyribonucleoside - Pyrimidone - Hydropyrimidine - Pyrimidine - Tetrahydrofuran - Heteroaromatic compound - Vinylogous amide - Lactam - Urea - Oxacycle - Organoheterocyclic compound - Azacycle - Hydrocarbon derivative - Organic oxide - Organopnictogen compound - Organic oxygen compound - Primary alcohol - Organooxygen compound - Organonitrogen compound - Alcohol - Organic nitrogen compound - Aromatic heteromonocyclic compound
DescriptionThis compound belongs to the class of organic compounds known as pyrimidine 2',3'-dideoxyribonucleosides. These are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at positions 2 and 3.
External Descriptors Not available
3D Structure
Interactive Chemical Structure Model





Associated Targets(Human)
CCRF-CEM (65223 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CEM-SS (2428 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CEM-TK(-) (45 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
MT4 (17854 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
ATH-8 cell line (300 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Associated Targets(non-human)
TK Thymidine kinase (276 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
pol Human immunodeficiency virus type 1 reverse transcriptase (18245 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
dnk Deoxynucleoside kinase (95 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
deoA Thymidine phosphorylase (531 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Tk2 Thymidine kinase 2 (53 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human immunodeficiency virus 1 (70413 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Moloney murine leukemia virus (54 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Rauscher murine leukemia virus (38 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Mechanisms of Action
Certificates(CoA,COO,BSE/TSE and Analysis Chart)
C of A & Other Certificates(BSE/TSE, COO):
Analytical Chart:

Find and download the COA for your product by matching the lot number on the packaging.

5 results found

Lot NumberCertificate TypeDateItem
K1816111Certificate of AnalysisJun 11, 2026 D119468
K1816110Certificate of AnalysisJun 11, 2026 D119468
I1422016Certificate of AnalysisApr 15, 2026 D119468
B1417067Certificate of AnalysisSep 16, 2025 D119468
K1816108Certificate of AnalysisSep 16, 2022 D119468
Chemical and Physical Properties
Specific Rotation[α][α]19/D +20.0°, c = 0.6 in H2O
Melt Point(°C)155-156°C
Molecular Weight226.230 g/mol
XLogP3-1.700
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count4
Rotatable Bond Count2
Exact Mass226.095 Da
Monoisotopic Mass226.095 Da
Topological Polar Surface Area78.900 Ų
Heavy Atom Count16
Formal Charge0
Complexity353.000
Isotope Atom Count0
Defined Atom Stereocenter Count2
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
The total count of all stereochemical bonds0
Covalently-Bonded Unit Count1
Solution Calculators
Reviews

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