By Target / Pathway / Disease

Explore small molecules, screening libraries, and tool compounds for discovery research. Browse by target, pathway, or ligand family to quickly find inhibitors, agonists, and chemical probes, with searchable structure/CAS data and supporting documents (SDS/COA where available).

136,942 products

Ready-to-screen compound libraries and focused sets for hit discovery. Browse libraries by target class, pathway, scaffold, or application, and review size, format, and compound information to build screening panels.Customize Your Screening Library to choose compounds, format, and volume, and we’ll prepare a ready-to-use set for you.Customize Your Screening Library

Navigate small molecules by ligand family or scaffold to build focused sets and explore structure–activity relationships. This category groups related chemotypes, helping you select analogs, fragments, and tool molecules for discovery research.

ADC-focused building blocks and tools to support antibody–drug conjugate research. Explore payloads, linkers, conjugation reagents, and related small-molecule components (where available) for designing and evaluating ADC constructs.

PROTAC

2,814

PROTAC and targeted protein degradation tools for discovery research. Browse degrader-related ligands, linkers, and building blocks (where available) to assemble or screen PROTAC designs, with clear identifiers for efficient selection.

Explore pathway-focused tool compounds to study and modulate key signaling cascades. Browse small molecules grouped by signaling pathway to support mechanism studies, phenotypic assays, and target validation, with clear identifiers for fast searching.

Find bioactive small molecules organized by protein target (DTO). Quickly locate tool compounds for specific targets and compare identifiers such as structure, CAS, and synonyms—plus supporting documents —to build screening and validation sets.

Shop small molecules and tool compounds organized by disease area (DOID). Discover chemical probes, libraries, and related products mapped to therapeutic areas to help assemble compound sets for screening, pathway exploration, and model studies.

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  1. BSJ-4-116
    CAS: 2519823-34-6 PubChem CID: 155235839 Formula: C40H49ClN8O8S Molecular Weight: 837.38
    10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B422871
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    Technical Identifiers
    IUPAC Name
    N-[7-[(3R)-3-[[5-chloro-4-(2-propan-2-ylsulfonylanilino)pyrimidin-2-yl]amino]piperidin-1-yl]heptyl]-2-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4show more
    SMILES
    CC(C)S(=O)(=O)C1=CC=CC=C1NC2=NC(=NC=C2Cl)NC3CCCN(C3)CCCCCCCNC(=O)COC4=CC=CC5=C4C(=O)N(C5=O)C6CCC(=O)NC6=O
    InChIKey
    YJOJMGTVKMABKQ-FIQOPJFZSA-N
    InChI
    1S/C40H49ClN8O8S/c1-25(2)58(55,56)32-16-7-6-14-29(32)45-36-28(41)22-43-40(47-36)44-26-12-11-21-48(23-26)20-9-5-3-4-8-19-42-34(51)24-57-31-15-10-13-27-show more
  2. BTR-1
    CAS: 18331-34-5 Formula: C12H11NOS2 Molecular Weight: 249.35
    ● In Stock — US warehouse, ships to EU* Item #: B412313
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    IUPAC Name
    5-benzylidene-3-ethyl-2-sulfanylidene-1,3-thiazolidin-4-one
    SMILES
    CCN1C(=O)C(=CC2=CC=CC=C2)SC1=S
    InChIKey
    ZQDPYAPUFMILTB-UHFFFAOYSA-N
    InChI
    1S/C12H11NOS2/c1-2-13-11(14)10(16-12(13)15)8-9-6-4-3-5-7-9/h3-8H,2H2,1H3
    Synonyms
    5-BENZYLIDENE-3-ETHYL RHODANINE|18331-34-5|C12H11NOS2|5-benzylidene-3-ethyl-2-sulfanylidene-1,3-thiazolidin-4-one|IFL...
  3. BX 471, Antagonist of CCR1
    CAS: 217645-70-0 EC Number: 803-071-3 Formula: C21H24ClFN4O3 Molecular Weight: 434.89
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B422618
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    IUPAC Name
    [5-chloro-2-[2-[(2R)-4-[(4-fluorophenyl)methyl]-2-methylpiperazin-1-yl]-2-oxoethoxy]phenyl]urea
    SMILES
    CC1CN(CCN1C(=O)COC2=C(C=C(C=C2)Cl)NC(=O)N)CC3=CC=C(C=C3)F
    InChIKey
    XQYASZNUFDVMFH-CQSZACIVSA-N
    InChI
    1S/C21H24ClFN4O3/c1-14-11-26(12-15-2-5-17(23)6-3-15)8-9-27(14)20(28)13-30-19-7-4-16(22)10-18(19)25-21(24)29/h2-7,10,14H,8-9,11-13H2,1H3,(H3,24,25,29)/show more
    Synonyms
    BX471 | BX-471 | B6060 | s2753 | A14409 | DTXSID10176164 | NCGC00370909-03 | UNII-76K17ZG4ZN | Urea, N-(5-chloro-2-(2...
  4. Bakkenolide A
    CAS: 19906-72-0 Formula: C15H22O2 Molecular Weight: 234.33
    ◐ .Made to order · 8–12 wks Item #: B414419
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    IUPAC Name
    (2R,3aR,7S,7aR)-7,7a-dimethyl-4'-methylidenespiro[3,3a,4,5,6,7-hexahydro-1H-indene-2,3'-oxolane]-2'-one
    SMILES
    CC1CCCC2C1(CC3(C2)C(=C)COC3=O)C
    InChIKey
    OVXAYHNZXBOVPV-QMGNLALYSA-N
    InChI
    1S/C15H22O2/c1-10-5-4-6-12-7-15(9-14(10,12)3)11(2)8-17-13(15)16/h10,12H,2,4-9H2,1,3H3/t10-,12+,14+,15+/m0/s1
    Synonyms
    (+)-Bakkenolide A | AKOS040750440 | Bakkenolide A | MFCD10566620 | Spiro(furan-3(2H),2'-indan)-2-one, 3'a,4,4',5,5',6...
  5. Batefenterol, Muscarinic acetylcholine receptor M3 antagonist
    CAS: 743461-65-6 Formula: C40H42ClN5O7 Molecular Weight: 740.24
    10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B425791
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    IUPAC Name
    [1-[3-[2-chloro-4-[[[(2R)-2-hydroxy-2-(8-hydroxy-2-oxo-1H-quinolin-5-yl)ethyl]amino]methyl]-5-methoxyanilino]-3-oxopropyl]piperidin-4-yl] N-(2-phenylpshow more
    SMILES
    COC1=CC(=C(C=C1CNCC(C2=C3C=CC(=O)NC3=C(C=C2)O)O)Cl)NC(=O)CCN4CCC(CC4)OC(=O)NC5=CC=CC=C5C6=CC=CC=C6
    InChIKey
    URWYQGVSPQJGGB-DHUJRADRSA-N
    InChI
    1S/C40H42ClN5O7/c1-52-36-22-33(31(41)21-26(36)23-42-24-35(48)29-11-13-34(47)39-30(29)12-14-37(49)45-39)43-38(50)17-20-46-18-15-27(16-19-46)53-40(51)44show more
    Synonyms
    Batefenterol | GSK961081 | GSK-961081 | 1-(3-((2-Chloro-4-((((2R)-2-hydroxy-2-(8-hydroxy-2-oxo-1,2-dihydroquinolin-5-...
  6. Barnidipine
    CAS: 104713-75-9 Formula: C27H29N3O6 Molecular Weight: 491.55
    ● In Stock — US warehouse, ships to EU* Item #: B412594
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    IUPAC Name
    5-O-[(3S)-1-benzylpyrrolidin-3-yl] 3-O-methyl (4S)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate
    SMILES
    CC1=C(C(C(=C(N1)C)C(=O)OC2CCN(C2)CC3=CC=CC=C3)C4=CC(=CC=C4)[N+](=O)[O-])C(=O)OC
    InChIKey
    VXMOONUMYLCFJD-DHLKQENFSA-N
    InChI
    1S/C27H29N3O6/c1-17-23(26(31)35-3)25(20-10-7-11-21(14-20)30(33)34)24(18(2)28-17)27(32)36-22-12-13-29(16-22)15-19-8-5-4-6-9-19/h4-11,14,22,25,28H,12-13show more
    Synonyms
    Barnidipino [INN-Spanish] | YM-09730-5(Free base) | BCP07244 | 104713-75-9 (free base) | HY-107322A | CHEBI:135793 | ...
  7. Batefenterol, Muscarinic acetylcholine receptor M3 antagonist
    CAS: 743461-65-6 Formula: C40H42ClN5O7 Molecular Weight: 740.24
    ● In Stock — US warehouse, ships to EU* Item #: B412136
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    Technical Identifiers
    IUPAC Name
    [1-[3-[2-chloro-4-[[[(2R)-2-hydroxy-2-(8-hydroxy-2-oxo-1H-quinolin-5-yl)ethyl]amino]methyl]-5-methoxyanilino]-3-oxopropyl]piperidin-4-yl] N-(2-phenylpshow more
    SMILES
    COC1=CC(=C(C=C1CNCC(C2=C3C=CC(=O)NC3=C(C=C2)O)O)Cl)NC(=O)CCN4CCC(CC4)OC(=O)NC5=CC=CC=C5C6=CC=CC=C6
    InChIKey
    URWYQGVSPQJGGB-DHUJRADRSA-N
    InChI
    1S/C40H42ClN5O7/c1-52-36-22-33(31(41)21-26(36)23-42-24-35(48)29-11-13-34(47)39-30(29)12-14-37(49)45-39)43-38(50)17-20-46-18-15-27(16-19-46)53-40(51)44show more
    Synonyms
    Batefenterol | GSK961081 | GSK-961081 | 1-(3-((2-Chloro-4-((((2R)-2-hydroxy-2-(8-hydroxy-2-oxo-1,2-dihydroquinolin-5-...
  8. Batimastat, Inhibitor of MMP1;Inhibitor of MMP13;Inhibitor of MMP3
    CAS: 130370-60-4 EC Number: 694-664-4 Formula: C23H31N3O4S2 Molecular Weight: 477.64
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B421183
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    IUPAC Name
    (2S,3R)-N-hydroxy-N'-[(2S)-1-(methylamino)-1-oxo-3-phenylpropan-2-yl]-3-(2-methylpropyl)-2-(thiophen-2-ylsulfanylmethyl)butanediamide
    SMILES
    CC(C)CC(C(CSC1=CC=CS1)C(=O)NO)C(=O)NC(CC2=CC=CC=C2)C(=O)NC
    InChIKey
    XFILPEOLDIKJHX-QYZOEREBSA-N
    InChI
    1S/C23H31N3O4S2/c1-15(2)12-17(18(22(28)26-30)14-32-20-10-7-11-31-20)21(27)25-19(23(29)24-3)13-16-8-5-4-6-9-16/h4-11,15,17-19,30H,12-14H2,1-3H3,(H,24,2show more
    Synonyms
    Butanediamide, N(sup 4)-hydroxy-N(sup 1)-(2-(methylamino)-2-oxo-1-(phenylmethyl)ethyl)-2-(2-methylpropyl)-3-((2-thien...
  9. Bax channel blocker
    CAS: 335165-68-9 PubChem CID: 2729026 Formula: C19H21Br2N3O Molecular Weight: 467.20
    10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B423450
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    IUPAC Name
    1-(3,6-dibromocarbazol-9-yl)-3-piperazin-1-ylpropan-2-ol;dihydrochloride
    SMILES
    C1CN(CCN1)CC(CN2C3=C(C=C(C=C3)Br)C4=C2C=CC(=C4)Br)O.Cl.Cl
    InChIKey
    HWFKCAFKXZFOQT-UHFFFAOYSA-N
    InChI
    1S/C19H21Br2N3O.2ClH/c20-13-1-3-18-16(9-13)17-10-14(21)2-4-19(17)24(18)12-15(25)11-23-7-5-22-6-8-23;;/h1-4,9-10,15,22,25H,5-8,11-12H2;2*1H
    Synonyms
    J-019229 | NCGC00092317-01 | 3,6-DIBROMO-ALPHA-(1-PIPERAZINYLMETHYL)-9H-CARBAZOLE-9-ETHANOL DIHYDROCHLORIDE | 1-(3,6-...
  10. Bafetinib (INNO-406), Tyrosine-protein kinase Lyn inhibitor
    CAS: 859212-16-1 Formula: C30H31F3N8O Molecular Weight: 576.62
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B408114
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    Synonyms
    NS-187 | (S)-4-((3-(dimethylamino)pyrrolidin-1-yl)methyl)-N-(4-methyl-3-(4-(pyrimidin-5-yl)pyrimidin-2-ylamino)phenyl...
  11. Bafilomycin C1
    CAS: 88979-61-7 Formula: C39H60O12 Molecular Weight: 720.89
    ◐ .Made to order · 8–12 wks Item #: B275381
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    IUPAC Name
    (E)-4-[2-hydroxy-2-[3-hydroxy-4-[(4E,6E,12E,14Z)-10-hydroxy-3,15-dimethoxy-7,9,11,13-tetramethyl-16-oxo-1-oxacyclohexadeca-4,6,12,14-tetraen-2-yl]pentshow more
    SMILES
    CC1CC(=CC=CC(C(OC(=O)C(=CC(=CC(C1O)C)C)OC)C(C)C(C(C)C2(CC(C(C(O2)C(C)C)C)OC(=O)C=CC(=O)O)O)O)OC)C
    InChIKey
    WUDBXVQNMOTFEE-FUGNQFJWSA-N
    InChI
    1S/C39H60O12/c1-21(2)36-26(7)31(49-33(42)16-15-32(40)41)20-39(46,51-36)28(9)35(44)27(8)37-29(47-10)14-12-13-22(3)17-24(5)34(43)25(6)18-23(4)19-30(48-1show more
    Synonyms
    (E)-4-[(2R,4R,5S,6R)-2-hydroxy-2-[(2S,3R,4S)-3-hydroxy-4-[(3S,4Z,6E,9S,10S,11R,12E,14Z)-10-hydroxy-3,15-dimethoxy-7,9...
  12. Baicalein
    CAS: 491-67-8 EC Number: 637-183-7 Formula: C15H10O5 Molecular Weight: 270.24
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: B408240
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    Technical Identifiers
    Synonyms
    4H-1-Benzopyran-4-one, 5,6,7-trihydroxy-2-phenyl-
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Frequently Asked Questions

What does the By Target/Pathway/Disease listing cover?
It groups compounds associated with targets in By Target/Pathway/Disease, organised so you can move from the pathway to an individual target and then to a specific chemotype. Each entry carries structure, CAS number, and reported activity.
How is By Target/Pathway/Disease organised?
By Target/Pathway/Disease is broken down into Compound Libraries, PROTACs, molecular glues and other degraders and Antibody-drug Conjugates(ADC). Compounds acting on more than one node appear under each relevant target.
How do I choose compounds for By Target/Pathway/Disease research?
For By Target/Pathway/Disease, pick a well-characterised reference compound for the node you want to perturb, and pair it with a structurally unrelated compound hitting the same target — that is the cleanest way to separate pathway effects from off-target ones. Check potency, selectivity, and cell permeability against your assay format. All products are supplied for professional research and development use only, and are not for use in humans, animals, diagnostics, or therapy.
How do I find a specific compound within By Target/Pathway/Disease?
Search By Target/Pathway/Disease by compound name, CAS number, or SMILES, or drill down through the target listing. Unlisted compounds and bulk quantities: [email protected]. We supply verified businesses, research institutions, universities, and government agencies.

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