By Target / Pathway / Disease

Explore small molecules, screening libraries, and tool compounds for discovery research. Browse by target, pathway, or ligand family to quickly find inhibitors, agonists, and chemical probes, with searchable structure/CAS data and supporting documents (SDS/COA where available).

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Ready-to-screen compound libraries and focused sets for hit discovery. Browse libraries by target class, pathway, scaffold, or application, and review size, format, and compound information to build screening panels.Customize Your Screening Library to choose compounds, format, and volume, and we’ll prepare a ready-to-use set for you.Customize Your Screening Library

Navigate small molecules by ligand family or scaffold to build focused sets and explore structure–activity relationships. This category groups related chemotypes, helping you select analogs, fragments, and tool molecules for discovery research.

ADC-focused building blocks and tools to support antibody–drug conjugate research. Explore payloads, linkers, conjugation reagents, and related small-molecule components (where available) for designing and evaluating ADC constructs.

PROTAC

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PROTAC and targeted protein degradation tools for discovery research. Browse degrader-related ligands, linkers, and building blocks (where available) to assemble or screen PROTAC designs, with clear identifiers for efficient selection.

Explore pathway-focused tool compounds to study and modulate key signaling cascades. Browse small molecules grouped by signaling pathway to support mechanism studies, phenotypic assays, and target validation, with clear identifiers for fast searching.

Find bioactive small molecules organized by protein target (DTO). Quickly locate tool compounds for specific targets and compare identifiers such as structure, CAS, and synonyms—plus supporting documents —to build screening and validation sets.

Shop small molecules and tool compounds organized by disease area (DOID). Discover chemical probes, libraries, and related products mapped to therapeutic areas to help assemble compound sets for screening, pathway exploration, and model studies.

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  1. CP 93129 dihydrochloride
    CAS: 879089-64-2 PubChem CID: 46927988 Formula: C12H13N3O•2HCl Molecular Weight: 288.18
    ● In Stock — US warehouse, ships to EU* Item #: C287389
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    Technical Identifiers
    IUPAC Name
    3-(1,2,3,6-tetrahydropyridin-4-yl)-1,4-dihydropyrrolo[3,2-b]pyridin-5-one;dihydrochloride
    SMILES
    C1CNCC=C1C2=CNC3=C2NC(=O)C=C3.Cl.Cl
    InChIKey
    FLVJHUZZKVJQNH-UHFFFAOYSA-N
    InChI
    1S/C12H13N3O.2ClH/c16-11-2-1-10-12(15-11)9(7-14-10)8-3-5-13-6-4-8;;/h1-3,7,13-14H,4-6H2,(H,15,16);2*1H
    Synonyms
    SR-01000597935-1 | 3-(1,2,3,6-tetrahydropyridin-4-yl)-1,4-dihydropyrrolo[3,2-b]pyridin-5-one;dihydrochloride | CP 931...
  2. CY 208-243
    CAS: 100999-26-6 Formula: C19H18N2 Molecular Weight: 274.36
    ◐ .Made to order · 8–12 wks Item #: C286833
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    IUPAC Name
    (2R,11R)-10-methyl-10,15-diazapentacyclo[11.6.1.02,11.03,8.016,20]icosa-1(20),3,5,7,13,16,18-heptaene
    SMILES
    CN1CC2=CC=CC=C2C3C1CC4=CNC5=CC=CC3=C45
    InChIKey
    WRNKIDLXXXIELU-IEBWSBKVSA-N
    InChI
    1S/C19H18N2/c1-21-11-12-5-2-3-6-14(12)19-15-7-4-8-16-18(15)13(10-20-16)9-17(19)21/h2-8,10,17,19-20H,9,11H2,1H3/t17-,19-/m1/s1
    Synonyms
    (-)-TRANS-4,6,6A,7,8,12B-HEXAHYDRO-7-METHYLINDOLO(4,3-AB)PHENANTHRIDINE | 4,6,6A,7,8,12B-HEXAHYDRO-7-METHYL-INDOLO(4,...
  3. CYM 50260
    CAS: 1355026-60-6 Formula: C14H11Cl3FNO2 Molecular Weight: 350.6
    ● In Stock — US warehouse, ships to EU* Item #: C288779
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    IUPAC Name
    2-chloro-3-[2-(2,4-dichlorophenoxy)ethoxy]-6-(fluoromethyl)pyridine
    SMILES
    C1=CC(=C(C=C1Cl)Cl)OCCOC2=C(N=C(C=C2)CF)Cl
    InChIKey
    FHPOTBQOUBMMCI-UHFFFAOYSA-N
    InChI
    1S/C14H11Cl3FNO2/c15-9-1-3-12(11(16)7-9)20-5-6-21-13-4-2-10(8-18)19-14(13)17/h1-4,7H,5-6,8H2
    Synonyms
    UNII-SK574R8X7V | 3-[2-[2,4-bis(chloranyl)phenoxy]ethoxy]-2-chloranyl-6-(fluoranylmethyl)pyridine | HY-108494 | Pyrid...
  4. CYM 50358 hydrochloride
    CAS: 1781750-72-8 Formula: C20H18Cl2N2O2.HCl Molecular Weight: 425.74
    ● In Stock — US warehouse, ships to EU* Item #: C288790
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    IUPAC Name
    N-[4-(aminomethyl)-2,6-dimethylphenyl]-5-(2,5-dichlorophenyl)furan-2-carboxamide;hydrochloride
    SMILES
    CC1=CC(=CC(=C1NC(=O)C2=CC=C(O2)C3=C(C=CC(=C3)Cl)Cl)C)CN.Cl
    InChIKey
    OFDSTJOMVDAKCS-UHFFFAOYSA-N
    InChI
    1S/C20H18Cl2N2O2.ClH/c1-11-7-13(10-23)8-12(2)19(11)24-20(25)18-6-5-17(26-18)15-9-14(21)3-4-16(15)22;/h3-9H,10,23H2,1-2H3,(H,24,25);1H
    Synonyms
    N-[(4-(Aminomethyl)-2,6-dimethylphenyl]-5-(2,5-dichlorophenyl)-2-furancarboxamide hydrochloride
  5. CYM 50769
    CAS: 1421365-63-0 EC Number: 808-877-9 Formula: C24H17ClN2O3 Molecular Weight: 416.86
    ● In Stock — US warehouse, ships to EU* Item #: C288745
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    IUPAC Name
    5-chloro-2-(9H-fluoren-9-yl)-4-(4-methoxyphenoxy)pyridazin-3-one
    SMILES
    COC1=CC=C(C=C1)OC2=C(C=NN(C2=O)C3C4=CC=CC=C4C5=CC=CC=C35)Cl
    InChIKey
    QHVSQUYCVUHYKT-UHFFFAOYSA-N
    InChI
    1S/C24H17ClN2O3/c1-29-15-10-12-16(13-11-15)30-23-21(25)14-26-27(24(23)28)22-19-8-4-2-6-17(19)18-7-3-5-9-20(18)22/h2-14,22H,1H3
    Synonyms
    CYM50769 | CYM-50769 | 5-Chloro-2-(9H-fluoren-9-yl)-4-(4-methoxyphenoxy)-3(2H)-pyridazinone | 5-chloro-2-(9H-fluoren-...
  6. CVT-313, Inhibitor of cyclin dependent kinase 1;Inhibitor of cyclin dependent kinase 2
    CAS: 199986-75-9 Formula: C20H28N6O3 Molecular Weight: 400.47
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: C422433
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    IUPAC Name
    2-[2-hydroxyethyl-[6-[(4-methoxyphenyl)methylamino]-9-propan-2-ylpurin-2-yl]amino]ethanol
    SMILES
    CC(C)N1C=NC2=C(N=C(N=C21)N(CCO)CCO)NCC3=CC=C(C=C3)OC
    InChIKey
    NQVIIUBWMBHLOZ-UHFFFAOYSA-N
    InChI
    1S/C20H28N6O3/c1-14(2)26-13-22-17-18(21-12-15-4-6-16(29-3)7-5-15)23-20(24-19(17)26)25(8-10-27)9-11-28/h4-7,13-14,27-28H,8-12H2,1-3H3,(H,21,23,24)
    Synonyms
    T5490K8I7S | 2,2'-((9-Isopropyl-6-((4-methoxybenzyl)amino)-9H-purin-2-yl)azanediyl)diethanol | Cdk2 Inhibitor III | f...
  7. CW069
    CAS: 1594094-64-0 PubChem CID: 73427517 Formula: C23H21IN2O3 Molecular Weight: 500.33
    ● In Stock — US warehouse, ships to EU* Item #: C413741
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    IUPAC Name
    2-[[(2S)-2-(benzylamino)-3-phenylpropanoyl]amino]-5-iodobenzoic acid
    SMILES
    C1=CC=C(C=C1)CC(C(=O)NC2=C(C=C(C=C2)I)C(=O)O)NCC3=CC=CC=C3
    InChIKey
    IRDIXDXDSUBHIU-NRFANRHFSA-N
    InChI
    1S/C23H21IN2O3/c24-18-11-12-20(19(14-18)23(28)29)26-22(27)21(13-16-7-3-1-4-8-16)25-15-17-9-5-2-6-10-17/h1-12,14,21,25H,13,15H2,(H,26,27)(H,28,29)/t21-show more
    Synonyms
    2-[[(2S)-2-(benzylamino)-3-phenylpropanoyl]amino]-5-iodobenzoic acid | (S)-2-(2-(benzylamino)-3-phenylpropanamido)-5-...
  8. CW069
    CAS: 1594094-64-0 PubChem CID: 73427517 Formula: C23H21IN2O3 Molecular Weight: 500.33
    10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: C421907
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    IUPAC Name
    2-[[(2S)-2-(benzylamino)-3-phenylpropanoyl]amino]-5-iodobenzoic acid
    SMILES
    C1=CC=C(C=C1)CC(C(=O)NC2=C(C=C(C=C2)I)C(=O)O)NCC3=CC=CC=C3
    InChIKey
    IRDIXDXDSUBHIU-NRFANRHFSA-N
    InChI
    1S/C23H21IN2O3/c24-18-11-12-20(19(14-18)23(28)29)26-22(27)21(13-16-7-3-1-4-8-16)25-15-17-9-5-2-6-10-17/h1-12,14,21,25H,13,15H2,(H,26,27)(H,28,29)/t21-show more
    Synonyms
    (S)-2-(2-(benzylamino)-3-phenylpropanamido)-5-iodobenzoic acid
  9. CX-5461
    CAS: 1138549-36-6 Formula: C27H27N7O2S Molecular Weight: 513.61
    ● In Stock — US warehouse, ships to EU* Item #: C127663
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    IUPAC Name
    2-(4-methyl-1,4-diazepan-1-yl)-N-[(5-methylpyrazin-2-yl)methyl]-5-oxo-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide
    SMILES
    CC1=CN=C(C=N1)CNC(=O)C2=C3N(C4=CC=CC=C4S3)C5=C(C2=O)C=CC(=N5)N6CCCN(CC6)C
    InChIKey
    XGPBJCHFROADCK-UHFFFAOYSA-N
    InChI
    1S/C27H27N7O2S/c1-17-14-29-18(15-28-17)16-30-26(36)23-24(35)19-8-9-22(33-11-5-10-32(2)12-13-33)31-25(19)34-20-6-3-4-7-21(20)37-27(23)34/h3-4,6-9,14-15show more
    Synonyms
    1138549-36-6 | 2-(4-methyl-1,4-diazepan-1-yl)-N-[(5-methylpyrazin-2-yl)methyl]-5-oxo-[1,3]benzothiazolo[3,2-a][1,8]na...
  10. CX-5461
    CAS: 1138549-36-6 Formula: C27H27N7O2S Molecular Weight: 513.61
    2mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: C420693
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    IUPAC Name
    2-(4-methyl-1,4-diazepan-1-yl)-N-[(5-methylpyrazin-2-yl)methyl]-5-oxo-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide
    SMILES
    CC1=CN=C(C=N1)CNC(=O)C2=C3N(C4=CC=CC=C4S3)C5=C(C2=O)C=CC(=N5)N6CCCN(CC6)C
    InChIKey
    XGPBJCHFROADCK-UHFFFAOYSA-N
    InChI
    1S/C27H27N7O2S/c1-17-14-29-18(15-28-17)16-30-26(36)23-24(35)19-8-9-22(33-11-5-10-32(2)12-13-33)31-25(19)34-20-6-3-4-7-21(20)37-27(23)34/h3-4,6-9,14-15show more
    Synonyms
    1138549-36-6 | 2-(4-methyl-1,4-diazepan-1-yl)-N-[(5-methylpyrazin-2-yl)methyl]-5-oxo-[1,3]benzothiazolo[3,2-a][1,8]na...
  11. CX-6258 HCl
    CAS: 1353859-00-3 Formula: C26H24ClN3O3.HCl Molecular Weight: 498.4
    10mM in DMSO
    ● In Stock — US warehouse, ships to EU* Item #: C421345
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    IUPAC Name
    (3E)-5-chloro-3-[[5-[3-(4-methyl-1,4-diazepane-1-carbonyl)phenyl]furan-2-yl]methylidene]-1H-indol-2-one;hydrochloride
    SMILES
    CN1CCCN(CC1)C(=O)C2=CC=CC(=C2)C3=CC=C(O3)C=C4C5=C(C=CC(=C5)Cl)NC4=O.Cl
    InChIKey
    YYIMMVXTWBIEAG-YHLMHSEJSA-N
    InChI
    1S/C26H24ClN3O3.ClH/c1-29-10-3-11-30(13-12-29)26(32)18-5-2-4-17(14-18)24-9-7-20(33-24)16-22-21-15-19(27)6-8-23(21)28-25(22)31;/h2,4-9,14-16H,3,10-13H2show more
    Synonyms
    (3E)-5-chloro-3-[[5-[3-[(hexahydro-4-methyl-1H-1,4-diazepin-1-yl)carbonyl]phenyl]-2-furanyl]methylene]-1,3-dihydro-2H...
  12. CY 09, Inhibitor of NLRP3
    CAS: 1073612-91-5 Formula: C19H12F3NO3S2 Molecular Weight: 423.43
    Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. 10mM in DMSO
    ◐ .Made to order · 8–12 wks Item #: C420525
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    IUPAC Name
    4-[[4-oxo-2-sulfanylidene-3-[[3-(trifluoromethyl)phenyl]methyl]-1,3-thiazolidin-5-ylidene]methyl]benzoic acid
    SMILES
    C1=CC(=CC(=C1)C(F)(F)F)CN2C(=O)C(=CC3=CC=C(C=C3)C(=O)O)SC2=S
    InChIKey
    DJTINRHPPGAPLD-UHFFFAOYSA-N
    InChI
    1S/C19H12F3NO3S2/c20-19(21,22)14-3-1-2-12(8-14)10-23-16(24)15(28-18(23)27)9-11-4-6-13(7-5-11)17(25)26/h1-9H,10H2,(H,25,26)
    Synonyms
    4-[[4-Oxo-2-thioxo-3-[[3-(trifluoromethyl)phenyl]methyl]-5-thiazolidinylidene]methyl]benzoic acid;4-4-Oxo-2-thioxo-3-...
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Frequently Asked Questions

What does the By Target/Pathway/Disease listing cover?
It groups compounds associated with targets in By Target/Pathway/Disease, organised so you can move from the pathway to an individual target and then to a specific chemotype. Each entry carries structure, CAS number, and reported activity.
How is By Target/Pathway/Disease organised?
By Target/Pathway/Disease is broken down into Compound Libraries, PROTACs, molecular glues and other degraders and Antibody-drug Conjugates(ADC). Compounds acting on more than one node appear under each relevant target.
How do I choose compounds for By Target/Pathway/Disease research?
For By Target/Pathway/Disease, pick a well-characterised reference compound for the node you want to perturb, and pair it with a structurally unrelated compound hitting the same target — that is the cleanest way to separate pathway effects from off-target ones. Check potency, selectivity, and cell permeability against your assay format. All products are supplied for professional research and development use only, and are not for use in humans, animals, diagnostics, or therapy.
How do I find a specific compound within By Target/Pathway/Disease?
Search By Target/Pathway/Disease by compound name, CAS number, or SMILES, or drill down through the target listing. Unlisted compounds and bulk quantities: [email protected]. We supply verified businesses, research institutions, universities, and government agencies.

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