Sulfo-Cy5 Azide - ≥95% , CAS No.1782950-80-4

CAS: 1782950-80-4 Cat. No.: S595801 Molecular Weight: 833.01 PubChem CID: 146680155

GRADE & PURITY ≥95%

Storage

Protected from light,Store at -20°C,Argon charged

Shipped In

Ice chest + Ice pads

Overview

Extinction Coefficient Excitation Maximum: 250000;

Sulfo-Cy5 azide is a fluorescent dye and non targeted contrast agent. Sulfo-Cy5 azide has been used for RNA labeling and imaging. Sulfo-Cy5 azide is a click chemistry reagent. It contains Azide groups and can undergo copper catalyzed azide alkyne cycloaddition reaction (CuAAc) with molecules containing Alkyne groups. It can also undergo ring tension driven alkyne azide cycloaddition reaction (SPAAC) with molecules containing DBCO or BCN groups

Sulfo-Cy5 Azide is a water-soluble dye containing an azide group, which enables Click Chemistry. Absorbance and emission of the dye are identical to Cy5 fluorophore. The reagent is designed for the labeling of sensitive molecules such as proteins, and even intact biological objects in water phase.

Specifications

Specifications & Purity

≥95%

Biochemical and Physiological Mechanisms

Sulfo-Cy5 azide is a fluorescent dye and nontargeted contrast agent. Sulfo-Cy5 azide has been used to label and image RNA[1][2]. Sulfo-Cy5 azide is a click chemistry reagent, it contains an Azide group and can undergo copper-catalyzed azide-alkyne cycload

Storage

Protected from light, Store at -20°C, Argon charged

Shipped In

Ice chest + Ice pads

This product requires cold chain shipping. Ground and other economy services are not available.

Purity

≥95%

Names and Identifiers

• Canonical Smiles: CC1(C2=C(C=CC(=C2)S(=O)(=O)[O-])[N+](=C1C=CC=CC=C3C(C4=C(N3CCCCCC(=O)NCCCN=[N+]=[N-])C=CC(=C4)S(=O)(=O)O)(C)C)CCCS(=O)(=O)O)C
• IUPAC Name: 2-[(1E,3E,5E)-5-[1-[6-(3-azidopropylamino)-6-oxohexyl]-3,3-dimethyl-5-sulfoindol-2-ylidene]penta-1,3-dienyl]-3,3-dimethyl-1-(3-sulfopropyl)indol-1-ium-5-sulfonate
• InChIKey: DUWZWZJMKCNGSI-UHFFFAOYSA-N
• INCHI: 1S/C37H48N6O10S3/c1-36(2)29-25-27(55(48,49)50)16-18-31(29)42(22-10-6-9-15-35(44)39-20-11-21-40-41-38)33(36)13-7-5-8-14-34-37(3,4)30-26-28(56(51,52)53)17-19-32(30)43(34)23-12-24-54(45,46)47/h5,7-8,13-14,16-19,25-26H,6,9-12,15,20-24H2,1-4H3,(H3-,39,44,45,46,47,48,49,50,51,52,53)
• PubChem CID: 146680155
• Molecular Weight: 833.01

Taxonomic Classification

Taxonomy Tree

• Kingdom Organic compounds
  • Superclass Organoheterocyclic compounds
    • Class Indoles and derivatives
      • Subclass Indoles

• Kingdom: Organic compounds
• Superclass: Organoheterocyclic compounds
• Class: Indoles and derivatives
• Subclass: Indoles
• Intermediate Tree Nodes: Not available
• Direct Parent: 3-alkylindoles
• Alternative Parents: 1-sulfo,2-unsubstituted aromatic compounds Tertiary alkylarylamines N-acyl amines Benzenoids Sulfonyls Organosulfonic acids Alkanesulfonic acids Secondary carboxylic acid amides Amino acids and derivatives Azo compounds Azo imides Propargyl-type 1,3-dipolar organic compounds Azacyclic compounds Enamines Organic salts Carbonyl compounds Hydrocarbon derivatives Organic oxides Organic cations
• Molecular Framework: Aromatic heteropolycyclic compounds
• Substituents: 3-alkylindole - Arylsulfonic acid or derivatives - 1-sulfo,2-unsubstituted aromatic compound - Tertiary aliphatic/aromatic amine - Benzenoid - N-acyl-amine - Fatty amide - Fatty acyl - Organosulfonic acid or derivatives - Organic sulfonic acid or derivatives - Alkanesulfonic acid - Organosulfonic acid - Sulfonyl - Secondary carboxylic acid amide - Azo imide - Azo compound - Tertiary amine - Amino acid or derivatives - Carboxamide group - Azacycle - Carboxylic acid derivative - Enamine - Organic 1,3-dipolar compound - Propargyl-type 1,3-dipolar organic compound - Organic oxygen compound - Organic salt - Organic nitrogen compound - Amine - Carbonyl group - Hydrocarbon derivative - Organonitrogen compound - Organooxygen compound - Organosulfur compound - Organic oxide - Organic cation - Aromatic heteropolycyclic compound
• Description: This compound belongs to the class of organic compounds known as 3-alkylindoles. These are compounds containing an indole moiety that carries an alkyl chain at the 3-position.
• External Descriptors: Not available

Data sources

1. Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS. ClassyFire: Automated Chemical Classification With A Comprehensive, Computable Taxonomy. Journal of Cheminformatics, 2016, 8:61.

DOI: 10.1186/s13321-016-0174-y

Chemical and Physical Properties

• Solubility: Solubility in Water, DMSO, DMF, DCM
• Sensitivity: Light sensitive