BRD0539 - ≥98% , CAS No.1403838-79-8

CAS: 1403838-79-8 Cat. No.: B414216 Molecular Weight: 452.54
AVAILABLE TO ORDER
GRADE & PURITY ≥98%
Synonyms
1H-​Pyrrolo[3,​2-​c]​quinoline-​4-​methanol,8-​(2-​fluorophenyl)​-​2,​3,​3a,​4,​5,​9b-​hexahydro-​1-​[(4-​methylphenyl)​sulfonyl]​-​,(3aR,​4R,​9bR)​-
Storage
Store at -20°C
Shipped In
Ice chest + Ice pads
 ·  off list, applied to all prices below.
Size
Status
Price
Qty
2mg
B414216-2mg
8-12 wks(?) Production requires sourcing of materials. We appreciate your patience and understanding.
$516.90
5mg
B414216-5mg
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$859.90
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Why this grade

≥98% for sensitive chromatographic and analytical workflows requiring minimal baseline interference.

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Storage & shipping

Store at -20°C Ships Ice chest + Ice pads Check lot-specific COA for exact specifications.

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Quality documents

SDS, COA, datasheet, and spec sheet available for download. Lot-specific COA accessible via lot number lookup.

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Literature proof

Cited in 0 peer-reviewed publications across chromatography, organic synthesis, and cross-coupling reactions.

Overview

Information

BRD0539 BRD0539 is a potent inhibitor of Streptococcus pyogenes Cas9 (SpCas9) with IC50 of 22 μM in an in vitro DNA cleavage assay.


Targets

SpCas9 (Cell-free assay) 22 μM


In vitro

BRD0539 is stable in human plasma and reversibly inhibits SpCas9. BRD0539 does not interfere with the SpCas9:gRNA interaction. BRD0539 dose-dependently blocks the formation of the DNA-bound state in a dose-dependent fashion. BRD0539 impairs the perturbation induced by the 4PAM DNA. BRD0539 is able to inhibit SpCas9 in the eGFP-disruption assay.


Cell Research(from reference)

Cell lines:U2OS.eGFP.PEST cells 

Concentrations:15 μM 

Incubation Time:2–24 h 

Specifications

Synonyms
1H-​Pyrrolo[3, ​2-​c]​quinoline-​4-​methanol, 8-​(2-​fluorophenyl)​-​2, ​3, ​3a, ​4, ​5, ​9b-​hexahydro-​1-​[(4-​methylphenyl)​sulfonyl]​-​, (3aR, ​4R, ​9bR)​-
Specifications & Purity
≥98%
Biochemical and Physiological Mechanisms
BRD0539 is a potent inhibitor of Streptococcus pyogenes Cas9 (SpCas9) with IC50 of 22 μM in an in vitro DNA cleavage assay.
Storage
Store at -20°C
Shipped In
Ice chest + Ice pads
This product requires cold chain shipping. Ground and other economy services are not available.
Action Type
INHIBITOR
Purity
≥98%
Names and Identifiers
Canonical SmilesCC1=CC=C(C=C1)S(=O)(=O)N2CCC3C2C4=C(C=CC(=C4)C5=CC=CC=C5F)NC3CO
IUPAC Name[(3aR,4R,9bR)-8-(2-fluorophenyl)-1-(4-methylphenyl)sulfonyl-2,3,3a,4,5,9b-hexahydropyrrolo[3,2-c]quinolin-4-yl]methanol
InChIKeyCZOIXFMISSBIJL-DCEDVJGZSA-N
INCHI1S/C25H25FN2O3S/c1-16-6-9-18(10-7-16)32(30,31)28-13-12-20-24(15-29)27-23-11-8-17(14-21(23)25(20)28)19-4-2-3-5-22(19)26/h2-11,14,20,24-25,27,29H,12-13,15H2,1H3/t20-,24+,25-/m1/s1
Isomeric SMILES CC1=CC=C(C=C1)S(=O)(=O)N2CC[C@H]3[C@@H]2C4=C(C=CC(=C4)C5=CC=CC=C5F)N[C@H]3CO
Molecular Weight 452.54
Reaxy-Rn 56848416
Reaxys-RN_link_address https://www.reaxys.com/reaxys/secured/hopinto.do?context=S&query=IDE.XRN=56848416&ln=

Documentation

📋 Safety Data Sheet (SDS)

Comprehensive hazard, handling, storage, and regulatory compliance document.

Download SDS →

✅ Certificate of Analysis (COA)

Lot-specific quality data. Enter your lot number to retrieve the exact COA.

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📊 Datasheet

Quick-reference summary of product specifications and applications.

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🔬 Specification Sheet

Full quality attributes and acceptance criteria for this grade.

View spec sheet →

Advanced Data

Taxonomic Classification

Taxonomy Tree

KingdomOrganic compounds
SuperclassOrganoheterocyclic compounds
ClassQuinolines and derivatives
SubclassPhenylquinolines
Intermediate Tree Nodes Not available
Direct ParentPhenylquinolines
Alternative Parents N,N-disubstituted p-toluenesulfonamides  Pyrroloquinolines  Benzenesulfonamides  Hydroquinolines  Benzenesulfonyl compounds  Aralkylamines  Fluorobenzenes  Secondary alkylarylamines  Organosulfonamides  Aryl fluorides  Sulfonyls  Pyrrolidines  1,2-aminoalcohols  Azacyclic compounds  Primary alcohols  Organofluorides  Organic oxides  Hydrocarbon derivatives  
Molecular FrameworkAromatic heteropolycyclic compounds
Substituents Phenylquinoline - N,n-disubstituted p-toluenesulfonamide - Pyrroloquinoline - P-toluenesulfonamide - Benzenesulfonamide - Tetrahydroquinoline - Tosyl compound - Benzenesulfonyl group - Fluorobenzene - Halobenzene - Secondary aliphatic/aromatic amine - Toluene - Aralkylamine - Organosulfonic acid amide - Aryl fluoride - Benzenoid - Aryl halide - Monocyclic benzene moiety - Organosulfonic acid or derivatives - Organic sulfonic acid or derivatives - Sulfonyl - Pyrrolidine - 1,2-aminoalcohol - Secondary amine - Azacycle - Organosulfur compound - Organooxygen compound - Organonitrogen compound - Organofluoride - Organohalogen compound - Organic oxygen compound - Alcohol - Organic nitrogen compound - Amine - Organic oxide - Primary alcohol - Hydrocarbon derivative - Aromatic heteropolycyclic compound
DescriptionThis compound belongs to the class of organic compounds known as phenylquinolines. These are heterocyclic compounds containing a quinoline moiety substituted with a phenyl group.
External Descriptors Not available
3D Structure
Interactive Chemical Structure Model





Mechanisms of Action
Certificates(CoA,COO,BSE/TSE and Analysis Chart)
C of A & Other Certificates(BSE/TSE, COO):
Analytical Chart:
Chemical and Physical Properties
SolubilitySolubility (25°C) In vitro DMSO: 91 mg/mL (201.08 mM); Ethanol: 31 mg/mL (68.5 mM); Water: Insoluble;
Molecular Weight452.500 g/mol
XLogP34.200
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count6
Rotatable Bond Count4
Exact Mass452.157 Da
Monoisotopic Mass452.157 Da
Topological Polar Surface Area78.000 Ų
Heavy Atom Count32
Formal Charge0
Complexity751.000
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
The total count of all stereochemical bonds0
Covalently-Bonded Unit Count1
Solution Calculators
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