5-Chloro-2'-deoxyuridine - Moligand™,≥98% , CAS No.50-90-8

CAS: 50-90-8 Cat. No.: C276552 Molecular Weight: 262.65 EC Number: 623-009-7
AVAILABLE TO ORDER
GRADE & PURITY Moligand™ ? Moligand™ — Aladdin's line of ligands and bioactive small molecules. Use for receptor, pathway, and binding studies needing defined small-molecule tools. ≥98%
Synonyms
AKOS027447511 | MFCD00006531 | 5-Chloro-2 -deoxyuridine | 5-Chloro-2'-deoxyuridine | 5-Chlorodeoxyuridine | 2'-Deoxy-5-chlorouridine | NSC 749426 | NJCXGFKPQSFZIB-RRKCRQDMSA-N | 5-chloro-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimi
Storage
Store at -20°C
Shipped In
Ice chest + Ice pads
 ·  off list, applied to all prices below.
Size
Status
Price
Qty
50mg
C276552-50mg
1
$25.90
100mg
C276552-100mg
1
$35.90
250mg
C276552-250mg
1
$55.90
1g
C276552-1g
1
$155.90
Enter a quantity for the sizes you want to add.
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Why this grade

Moligand™,≥98% Moligand™ for sensitive chromatographic and analytical workflows requiring minimal baseline interference.

🌡

Storage & shipping

Store at -20°C Ships Ice chest + Ice pads Check lot-specific COA for exact specifications.

📋

Quality documents

SDS, COA, datasheet, and spec sheet available for download. Lot-specific COA accessible via lot number lookup.

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Literature proof

Cited in 0 peer-reviewed publications across chromatography, organic synthesis, and cross-coupling reactions.

Overview

5-Chloro-2'-deoxyuridine, an analogue of thymine, can be used to study the destructive effects of hypochlorous acid on DNA and DNA precursors.

Specifications

Synonyms
AKOS027447511 | MFCD00006531 | 5-Chloro-2 -deoxyuridine | 5-Chloro-2'-deoxyuridine | 5-Chlorodeoxyuridine | 2'-Deoxy-5-chlorouridine | NSC 749426 | NJCXGFKPQSFZIB-RRKCRQDMSA-N | 5-chloro-1-[(2R, 4S, 5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimi
Specifications & Purity
Moligand™, ≥98%
Biochemical and Physiological Mechanisms
Thymidine analogue, \xa0readily incorporated following phosphorylation, into newly synthesized DNA in place of thymidine. Used to study the miscoding potential of hypochlorous acid damage to DNA and DNA precursors.DNA labeled with 5-chloro-2′-deoxyuridine
Storage
Store at -20°C
Shipped In
Ice chest + Ice pads
This product requires cold chain shipping. Ground and other economy services are not available.
Grade
Moligand™
Purity
≥98%
Names and Identifiers
Canonical SmilesC1C(C(OC1N2C=C(C(=O)NC2=O)Cl)CO)O
IUPAC Name5-chloro-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
InChIKeyNJCXGFKPQSFZIB-RRKCRQDMSA-N
INCHI1S/C9H11ClN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1
Isomeric SMILES C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)Cl)CO)O
Molecular Weight 262.65
Reaxy-Rn 24727501
Reaxys-RN_link_address https://www.reaxys.com/reaxys/secured/hopinto.do?context=S&query=IDE.XRN=24727501&ln=

Documentation

📋 Safety Data Sheet (SDS)

Comprehensive hazard, handling, storage, and regulatory compliance document.

Download SDS →

✅ Certificate of Analysis (COA)

Lot-specific quality data. Enter your lot number to retrieve the exact COA.

Look up COA →

📊 Datasheet

Quick-reference summary of product specifications and applications.

View datasheet →

🔬 Specification Sheet

Full quality attributes and acceptance criteria for this grade.

View spec sheet →

Advanced Data

Taxonomic Classification

Taxonomy Tree

KingdomOrganic compounds
SuperclassNucleosides, nucleotides, and analogues
ClassPyrimidine nucleosides
SubclassPyrimidine 2'-deoxyribonucleosides
Intermediate Tree Nodes Not available
Direct ParentPyrimidine 2'-deoxyribonucleosides
Alternative Parents Pyrimidones  Halopyrimidines  Aryl chlorides  Hydropyrimidines  Vinylogous amides  Tetrahydrofurans  Heteroaromatic compounds  Ureas  Secondary alcohols  Lactams  Oxacyclic compounds  Azacyclic compounds  Organic oxides  Hydrocarbon derivatives  Organochlorides  Organonitrogen compounds  Organopnictogen compounds  Primary alcohols  
Molecular FrameworkAromatic heteromonocyclic compounds
Substituents Pyrimidine 2'-deoxyribonucleoside - Halopyrimidine - Pyrimidone - Aryl chloride - Aryl halide - Hydropyrimidine - Pyrimidine - Heteroaromatic compound - Vinylogous amide - Tetrahydrofuran - Lactam - Urea - Secondary alcohol - Oxacycle - Azacycle - Organoheterocyclic compound - Primary alcohol - Organooxygen compound - Organonitrogen compound - Organochloride - Organohalogen compound - Hydrocarbon derivative - Organic oxide - Organopnictogen compound - Organic oxygen compound - Alcohol - Organic nitrogen compound - Aromatic heteromonocyclic compound
DescriptionThis compound belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleosides. These are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at position 2.
External Descriptors Not available
3D Structure
Interactive Chemical Structure Model





Associated Targets(Human)
MAOA Tclin Monoamine oxidase A (11911 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Homo sapiens (32628 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
CCRF-CEM (65223 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Associated Targets(non-human)
tmk Thymidylate kinase (360 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
deoA Thymidine phosphorylase (531 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human alphaherpesvirus 2 (4932 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human gammaherpesvirus 4 (1538 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human alphaherpesvirus 3 (4092 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human betaherpesvirus 5 (5122 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Vaccinia virus (4609 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Human alphaherpesvirus 1 (11089 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Vesicular stomatitis virus (4460 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
L1210 (27553 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
L5178Y (1809 Activities)
Activity TypeRelationActivity valueUnitsAction TypeJournalPubMed IddoiAssay Aladdin ID
Mechanisms of Action
Certificates(CoA,COO,BSE/TSE and Analysis Chart)
C of A & Other Certificates(BSE/TSE, COO):
Analytical Chart:

Find and download the COA for your product by matching the lot number on the packaging.

13 results found

Lot NumberCertificate TypeDateItem
I2511065Certificate of AnalysisJun 15, 2026 C276552
D2617338Certificate of AnalysisMar 30, 2026 C276552
D2617341Certificate of AnalysisMar 30, 2026 C276552
D2617342Certificate of AnalysisMar 30, 2026 C276552
D2617343Certificate of AnalysisMar 30, 2026 C276552
I2407085Certificate of AnalysisMar 18, 2026 C276552
I2407086Certificate of AnalysisMar 18, 2026 C276552
I2407101Certificate of AnalysisMar 18, 2026 C276552
I2407122Certificate of AnalysisMar 18, 2026 C276552
I2407135Certificate of AnalysisMar 18, 2026 C276552
I2407088Certificate of AnalysisJun 11, 2025 C276552
I2407092Certificate of AnalysisJun 11, 2025 C276552
I2407103Certificate of AnalysisJun 11, 2025 C276552

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Chemical and Physical Properties
SolubilitySoluble in water
Molecular Weight262.650 g/mol
XLogP3-0.700
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count5
Rotatable Bond Count2
Exact Mass262.036 Da
Monoisotopic Mass262.036 Da
Topological Polar Surface Area99.100 Ų
Heavy Atom Count17
Formal Charge0
Complexity386.000
Isotope Atom Count0
Defined Atom Stereocenter Count3
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
The total count of all stereochemical bonds0
Covalently-Bonded Unit Count1
Documents & Articles
Solution Calculators
Reviews

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